PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G01740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 344aa    MW: 39205 Da    PI: 4.2621
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G01740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.53.9e-09759655
              AP2  6 VrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + +++++gr++A+++d  ++   ++ k+ + g ++++e Aa+a++ a++k++g
  OBART12G01740.1  7 INRHRWTGRFEAHLWDkNCSTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 59
                     789***********99554433744577777********************98 PP

2AP256.37.8e-18102154156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAaka++ a+ +++g+
  OBART12G01740.1 102 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 154
                      89****99**********988422...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.28167IPR001471AP2/ERF domain
PfamPF008478.0E-7759IPR001471AP2/ERF domain
SMARTSM003808.7E-16773IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-11968IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-12968IPR016177DNA-binding domain
PfamPF008473.0E-13102153IPR001471AP2/ERF domain
CDDcd000181.32E-26102163No hitNo description
SuperFamilySSF541711.77E-18102163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-19103161IPR001471AP2/ERF domain
PROSITE profilePS5103218.993103161IPR001471AP2/ERF domain
SMARTSM003805.3E-27103167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MHVSVCINRH RWTGRFEAHL WDKNCSTSLQ NKKKGRQGAY DSEEAAARAY DLAALKYWGP  60
ETVLNFPLEE YEKERSEMEG VSREEYLASL RRRSSGFSRG VSKYRGVARH HHNGRWEARI  120
GRVLGNKYLY LGTFDTQEEA AKAYDLAAIE YRGANAVTNF DISCYLDQPQ LLAQLQQEPQ  180
LLAQLQQEPQ VVPALHEEPQ DDDRSENAVQ ELSSSEANTS SDNNEPLAAD DSAECMNEPL  240
PIVDGIEESL WSPCLDYELD TMPGAYFSNS MNFSEWFNDE AFEGGMEYLF EGCSSITEGG  300
NSMDNSGVTE YNLFEECNML EKDISDFLDK DISDFFRQGH FNFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2476260.0AB247626.1 Oryza sativa Japonica Group OsANTL mRNA for aintegumenta-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617951.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y63e-84WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A0D3HR070.0A0A0D3HR07_9ORYZ; Uncharacterized protein
STRINGBGIOSGA034580-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-65AP2 family protein